etetoolkit.org - ETE Toolkit - Analysis and Visualization of (phylogenetic) trees

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Keywords: visualization, tree, ete, phylogeny, python, toolkit, phylogenetics, Newick, phylogenomics, ete2

eggnog.embl.de - EggNOG Database | Orthology predictions and functional annnotaion

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eggnogdb.embl.de - EggNOG Database | Orthology predictions and functional annnotaion

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eggnog5.embl.de - EggNOG Database | Orthology predictions and functional annnotaion

Keywords: Gene, tree, predictions, taxonomy, cog, eggnog, sequence, hmm, pfam, gene ontology